Pandemic: A Graph Evolution Story

Authors

Dube, Michael
Houghten, Sheridan
Ashlock, Daniel

Journal Title

Journal ISSN

Volume Title

Publisher

IEEE

Abstract

The Graph Evolution Tool (GET)was built to generate personal contact networks representing who can infect whom within a community. The tool is expanded in order to permit an infection scheme which divides the community into different districts, thus permitting within-district and between-district infections. The evolutionary algorithm comprising GET is expanded upon to simulate communities which include 512 individuals in up to eight districts, initially infecting one person in one district and spreading through a community. The overall goal is to generate communities that will maximize the length of an epidemic. The problem associated with adequately exploring the numerous parameters accompanying evolutionary algorithms is addressed using a point packing and insight from previous work. The Susceptible-Infected-Removed (SIR)model of infection was chosen as it provides a sufficient balance of simplicity and complexity for the problem.

Description

Citation

M. Dubé, S. Houghten and D. Ashlock, "Pandemic: A Graph Evolution Story," 2019 IEEE Conference on Computational Intelligence in Bioinformatics and Computational Biology (CIBCB), 2019, pp. 1-8, doi: 10.1109/CIBCB.2019.8791445.

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